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R&D Publications from BioCOS

  1. Integrated analysis of mRNA and miRNA expression in HeLa cells expressing low levels of Nucleolin" Accepted for publication in Nature Scientific Reports

  2. "Plasmodium falciparum ETRAMP14.1 interacts with PfEMP1, translocon components and ETRAMP members at the parasitophorous vacuolar membrane" Being submitted to Genome Biology

  3. Disease Risk Assessment, Encyclopedia of Systems Biology, Springer Press.

  4. Disease-oriented Causal Networks, Encyclopedia of Systems Biology, Springer Press.

  5. Cross Tissue Disease Network, Encyclopedia of Systems Biology, Springer Press.

  6. Visualization of Disease Networks, Encyclopedia of Systems Biology, Springer Press.

  7. Network Based Biomarkers, Encyclopedia of Systems Biology, Springer Press.

  8. Functional/signature network module for target pathway/gene discovery, Encyclopedia of Systems Biology, Springer Press.

  9. Characterization of nucleolin K88 acetylation defines a new pool of nucleolin colocalizing with pre-mRNA splicing factors, FEBS Lett. 2013 Mar 1;587(5):417-24. (pdf).

  10. Interaction of nucleolin with ribosomal RNA genes and its role in RNA polymerase I transcription, Nucleic Acids Res. 2012 Oct;40(19):9441-54. doi: 10.1093/nar/gks720. Epub 2012 Aug 2. (pdf)

  11. Enhanced photosynthesis and Carbon metabolism favor Arsenic tolerance in Artemisia annua, a medicinal plant as revealed by homology-based Proteomics, International Journal of Proteomics 02/2014. Note- All multivariate analysis is done by BioCOS in this paper- Refer to acknowledgement section. (pdf)

  12. Protein Domain of Unknown Function 3233 is a Translocation Domain of Autotransporter Secretory Mechanism in Gamma proteobacteria PLoS ONE, Nov 01, 2011 ( pdf )

  13. RNAcentral: a vision for an international database of RNA sequences. in RNA (pdf)

  14. Expression-based network biology identifies alteration in key regulatory pathways of Type 2 Diabetes and associated risk / complications(PLoS ONE, December 2009 | Volume 4 | Issue 12). (pdf)

  15. Current status and emerging role of glutathione in food grade lactic acid bacteria, Microbial Cell Factories 2012 (pdf)

  16. Bioinformatics Resources and Application Tools for Insect Related Data Like Genomics, Proteomics and Transcriptomics and Gene Expression published by National Bureau of Agriculturally Important Insects (ICAR) Status report by BioCOS.

  17. Multiscale Wavelet Based Analysis of Mass Spectrometry Proteomics Data: Denoising and Statistical Feature Detection . Bangalore Bio 2013 (pdf).

  18. iMNET - An Automated pipeline tool for mining and analyzing high throughput data to build systems biology models. June 2010, in Bangalore India Bio 2010 (pdf).

  19. An integrated network biology approach identifies transcriptionally altered pathways indicating risk of cardiovascular diseases in Diabetes Type II condition. APBC 2010 (The Eighth Asia Pacific Bioinformatics Conference), Bangalore, India. | 18-21 January 2010.) (pdf).

  20. Multiscale Analysis of Mass Spectrometry Proteomics Data - Wavelet Based Statistical Feature Detection. Proteomics (In National Conference on: Proteomic applications: Perspectives in Healthcare (NCPPH) at Karunya University Coimbatore Tamil Nadu. | 28th & 29th January 2010.

  21. Significant deregulated pathways in Diabetes type II complications identified through expression based network biology. IC3 2009, CCIS 40, pp. 445 - 453, 2009.

  22. Novel Algorithms and Methodologies for Creation of Molecular Network Models to Identify Early Biomarkers and Disease Mechanisms from High Throughput 'OMICS' Data,in National Conference on Genomics, Proteomics & Systems Biology (CGPSYS08) 2008, Bangalore .

  23. Proteomics Data De-noising A Wavelet Based Statistical Approach (Won best poster award) in National Conference on Genomics, Proteomics & Systems Biology (CGPSYS08) 2008 , Bangalore (pdf).

  24. National Conference on Proteomic Applications: Perspective Health Care (28-29 January, 2010) at Karunya University, Tamil Nadu - Presentation.

  25. Imaging and Image Processing of Eye and related diseases at Narayan Nethralya, Yashwantpur, Bangalore.- Presentation.


  27. Computational Techniques in Life Sciences,- Wavelets, Multi-scale Data Analysis and Image Processing at SMVIT Bangalore- Talk.

  28. Genome wide Allelic Specific Expression(ASE) using Next generation Sequencing - Impact on Susceptibility Estimation of Complex Trait Diseases - BioCOS speaks at Genomics & Proteomics Conference at Bangalore Sept 27-28, 2013.